Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THCA rs28578314 chr20:61471768 G/C 0.000119 486 31 34.48 42.67 KM Plot
THCA rs2857982 chr4:3358665 G/A 5.25E-5 494 26.45 31.53 33.27 KM Plot
THCA rs28588417 chr2:234367112 G/A 8.89E-7 502 31.73 31 26.45 KM Plot
THCA rs28593253 chr1:19286336 T/C 0 496 5.8 33.83 31.53 KM Plot
THCA rs28613367 chr20:61471547 C/G 0.000125 486 30.63 34.48 42.67 KM Plot
THCA rs28621451 chr7:16471393 C/G 1.3E-12 488 31.38 31.47 31.93 KM Plot
THCA rs28715733 chr3:53920452 G/A 3.29E-6 495 31.6 31.93 24.75 KM Plot
THCA rs28735224 chr15:41537539 C/T 0.00011 495 31.6 31.62 33.27 KM Plot
THCA rs28766121 chr7:43949711 C/T 1.56E-9 502 31.15 33.5 31.03 KM Plot
THCA rs28787381 chr8:58112648 C/G 4.95E-5 503 31.15 38.17 34.8 KM Plot
THCA rs28811001 chr8:60167422 A/G 6.35E-5 502 31.98 30.13 20.5 KM Plot
THCA rs28872793 chr8:60167501 T/A 9.48E-5 499 31.78 30.38 20.5 KM Plot
THCA rs28896827 chr12:14452427 A/G 5.34E-5 498 31.4 36.93 32.45 KM Plot
THCA rs28924725 chr1:152974920 T/A 0.000141 500 31.6 32.37 37.7 KM Plot
THCA rs2944250 chr2:87017069 C/G 9.28E-6 485 32.77 30.47 27.4 KM Plot